Choose program to use and database to search:
Program blastn blastp blastx tblastn tblastx Database Please choose database Gossypium nucleotide sequences (all) Gossypium unigene sequences (all) Gossypium SSR database (all) Gossypium protein sequences (all) Gossypium core nucleotide sequences (genbank) Gossypium EST sequences (genbank) Gossypium GSS sequences (genbank) A. thaliana EST contigs (plantgdb) Arabidopsis Gene Index (tgi) G. hirsutum UniGene sequences (genbank) G. raimondii UniGene sequences (genbank) Gossypium EST contigs (plantgdb) G. arboreum EST contigs (plantgdb) G. hirsutum EST contigs (plantgdb) G. raimondii EST contigs (plantgdb) Cotton Gene Index (tgi) Gossypium Protein sequences (genbank) Gossypium Protein sequences (uniprot)
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From To
Expect 0.0000000001 (e-10) 0.00001 (e-5) 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
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